Colorectal Cancer : Methods and Protocols - Jean-François Beaulieu

Colorectal Cancer

Methods and Protocols

By: Jean-François Beaulieu (Editor)

Hardcover | 28 March 2018

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Dedication...

Preface...

Table of Contents...

Contributing Authors...


Part I Molecular Basis of Colorectal Cancer


1 Cell Line Models of Molecular Subtypes of Colorectal Cancer

Jennifer Mooi, Ian Luk, and John Mariadason


2 Dissecting Oncogenic RTK Pathways in Colorectal Cancer Initiation and Progression

Stephen McManus, Walid Chababi, Dominique Arsenault, Claire M. Dubois, and Caroline Saucier


3 Identification of Response Elements on Promoters Using Site Directed Mutagenesis and Chromatin Immunoprecipitation

Salah Boudjadi, Julie C. Carrier, and Jean-François Beaulieu


4 Identification and Functional Analysis of Gene Regulatory Sequences Interacting with Colorectal Tumor Suppressors

Katja Dahlgaard and Jesper Thorvald Troelsen


5 Methods for In Vivo Functional Studies of Chromatin-Modifying Enzymes in Early Steps of Colon Carcinogenesis

Martine Chevillard-Briet and Fabrice Escaffit


6 The Colorectal Cancer Microenvironment: Strategies for Studying the Role of Cancer Associated Fibroblasts

Rahul Bhome, Massimiliano Mellone, Katherine Emo, Gareth Thomas, Emre Sayan, and Alex H. Mirnezami


7 Methods for Assessing Apoptosis and Anoikis in Normal Intestine/Colon and Colorectal Cancer

Pierre H. Vachon


8 Molecular Analysis of the Microbiome in Colorectal Cancer

Fiona Clegg, Susan H. Berry, Richard Hansen and Georgina L. Hold


9 Proteomic Analysis of Colorectal Cancer Cells

Anaïs Chauvin and François-Michel Boisvert


10 Autophagic Flux Assessment in Colorectal Cancer Cells

Annie Lauzier and Steve Jean

Part II New Developments in Colorectal Cancer Diagnostics and Screening


11 Classification of Colorectal Cancer in Molecular Subtypes by Immunohistochemistry

Sanne ten Hoorn, Anne Trinh, Joan de Jong, Lianne Koens, and Louis Vermeulen


12 Stool DNA Integrity Method for Colorectal Cancer Detection

Claudia Rengucci, Giulia De Maio, Maura Menghi, and Daniele Calistri


13 RT-qPCR for Fecal Mature microRNA Quantification and Validation

Farid E. Ahmed, Nancy C. Ahmed, Mostafa M. Gouda, Paul W. Vos, and Chris Bonnerup


14 A Stool Multi-Target mRNA Assay for the Detection of Colorectal Neoplasms

Elizabeth Herring, Shigeru Kanaoka, Eric Tremblay, and Jean-François Beaulieu


15 Colorectal Cancer Detection Using Targeted LC-MS Metabolic Profiling

Danijel Djukovic, Jiangjiang Zhang, and Daniel Raftery


16 Proteomic Profiling for Colorectal Cancer Biomarker Discovery

Paula Alvarez-Chaver, Loretta De Chiara, and Vicenta Soledad Martinez-Zorzano


17 Tumor-Derived Microparticles to Monitor Colorectal Cancer Evolution

Diane Mege, Laurence Panicot-Dubois, and Christophe Dubois


Part III Recent Advances in Colorectal Cancer Therapeutics


18 Molecular Testing for the Treatment of Advanced Colorectal Cancer: An Overview

Patrick S. Lin and Thomas J. Semrad


19 Testing Cell-Based Immunotherapy for Colorectal Cancer

Jong Soon Kang, Yeo Dae Yoon, Myeong Youl Lee, Chang Woo Lee, Suk Jong Lee, and Sang-Bae Han


20 Patient-Derived Xenograft Models of Colorectal Cancer: Procedures for Engraftment and Propagation

Danielle M. Burgenske, David J. Monsma, and Jeffrey P. MacKeigan


21 Use of Organoids to Characterize Signaling Pathways in Cancer Initiation

Christina Oatway, Calley L. Hirsch, and Alex Gregorieff


22 Identification of Novel Molecules Targeting Cancer Stem Cells

Yannick D. Benoit


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