Preface | p. xiii |
Acknowledgements | p. xvii |
| |
Introduction to Part A | p. 1 |
The example | p. 5 |
Styles of analysis | p. 11 |
Preliminary considerations | p. 11 |
Scatter Plot Matrices | p. 13 |
Within environment analyses for single attributes | p. 17 |
Overlap plots | p. 22 |
Profiles across environments and B-confidence | p. 27 |
Grouping the data | p. 30 |
Smoothing the profiles | p. 35 |
Profiles across attributes | p. 39 |
Choice of expression | p. 39 |
This account in a larger framework | p. 43 |
| |
Introduction to Part B | p. 47 |
Overall behaviour: SPLOMs across attributes and across environments | p. 51 |
Semigraphical comparison of genotypes for each attribute-environment pair | p. 69 |
Profiles of individual genotypes and groups | p. 101 |
SPLOMs for genotype groups | p. 129 |
Re-attribution of the responses on the 43 genotypes | p. 137 |
Our specific example | p. 148 |
Styles of re-attribution | p. 152 |
Semigraphical displays for the re-attributed data | p. 155 |
Re-environmenting | p. 169 |
Two remarks | p. 181 |
Overview of position | p. 181 |
Re-expression | p. 185 |
| |
Introduction to Part C | p. 211 |
Global aspects of the data | p. 213 |
Ordering of genotypes | p. 213 |
Linear ordering of genotypes | p. 214 |
Dispersed inheritance, etc | p. 218 |
Characterizing and ordering of environments | p. 219 |
Ordering of attributes | p. 222 |
Data laundry | p. 223 |
Seeking exotics | p. 224 |
Winsorization of anomalies | p. 226 |
Choices of expression | p. 231 |
Comparative scaling | p. 231 |
Comparative responses | p. 231 |
Re-expression of individual attributes | p. 232 |
Seeking exotic values | p. 233 |
SPLOMs | p. 233 |
Alternative displays | p. 245 |
Correlations among environments | p. 254 |
Local analyses and displays | p. 259 |
Local analysis within environments | p. 259 |
Adjustment of structured sets of s[superscript 2] values | p. 259 |
Choice of critical levels | p. 262 |
Benjamini-Hochberg (FDR) procedure | p. 264 |
Overlap plots | p. 266 |
Dealing with ties in the BSD procedure | p. 275 |
Profiles across environments and B-confidence | p. 278 |
Some plausible developments for the BSD | p. 285 |
Combined analyses | p. 289 |
Analysis over environments | p. 289 |
Analyses over attributes | p. 297 |
Grouping and labelling genotypes | p. 301 |
Grouping | p. 301 |
Labelling | p. 302 |
Idiolinkage, nearest and centroid | p. 303 |
Nearest | p. 303 |
Nearest algorithm | p. 303 |
Centroid | p. 304 |
Mean squared distance | p. 306 |
Other blended forms; xpanded idiolinkage | p. 307 |
Other blended forms | p. 307 |
Xpanded linkage | p. 307 |
Generalized xpansion | p. 308 |
Techniques so far proposed | p. 309 |
Robust forms of idiolinkage | p. 311 |
Flexible Winsorization | p. 311 |
Idiomax | p. 313 |
Expansion | p. 313 |
Plausible scope of exploration | p. 315 |
Robust sphering | p. 317 |
Robust orthogonalization | p. 318 |
Simplification | p. 319 |
Robust scaling | p. 320 |
Comments | p. 320 |
Relative importance? | p. 320 |
A side issue and more careful sphering | p. 323 |
Pattern of analysis | p. 323 |
Choice of scaling | p. 323 |
A possible exception | p. 325 |
Postcomment | p. 325 |
A suggestion about 'G in or out' | p. 327 |
Another suggestion | p. 327 |
Detrivialization of one- and two-way tables: an introduction | p. 333 |
The one-way case | p. 333 |
The two-way case | p. 335 |
Later attributes and subtables | p. 337 |
The second attribute | p. 337 |
The third attribute | p. 339 |
Later attributes | p. 339 |
Combination | p. 340 |
Postcomment | p. 340 |
Sphering the soybean data | p. 341 |
Ordering of attributes | p. 341 |
Robust orthogonalization | p. 342 |
Robust scaling | p. 347 |
Grouping the soybean genotypes | p. 351 |
First-stage grouping | p. 351 |
Second-stage grouping | p. 354 |
Group responses | p. 354 |
Alternative analyses | p. 357 |
Partitioning variability within groups | p. 357 |
Ordering the environments | p. 363 |
Greedy close ordering of environments | p. 363 |
One approach to plotting | p. 373 |
Smoothing in general | p. 374 |
Group 4 and attribute 1 as an example | p. 375 |
Looking at the seven groups for attribute 1 | p. 384 |
Looking at the seven groups for all attributes | p. 384 |
Smoothing short sequences (of perhaps 6 to 18 values) | p. 399 |
3R 3pR E[subscript 2] | p. 399 |
3[superscript +]R E[subscript 2] | p. 402 |
Presentations across attributes | p. 403 |
Choice of expression: generalities | p. 405 |
Matching re-expressions | p. 406 |
Purposes of choice of expression | p. 408 |
Rarity of conflict between these goals | p. 409 |
Tools for diagnosis | p. 410 |
Combining Q-diagnoses | p. 413 |
Breaking down the example | p. 413 |
Weighted regression | p. 413 |
Removable inhomogeneity of variability | p. 417 |
Replication within environments (e.g. 2[times]40) | p. 418 |
Replication between environments (e.g. 8[times]40) | p. 418 |
Inhomogeneity of interaction size (e.g. 8[times]40 or 8[times]18) | p. 418 |
Variability between replications within environments | p. 419 |
The special case of two versions | p. 426 |
Interaction variability | p. 428 |
Removable non-additivity | p. 433 |
Extended fits | p. 433 |
Choice of expression to promote additivity of response | p. 434 |
General case of several versions | p. 435 |
Linearity of response | p. 441 |
Relative importance and combination | p. 443 |
Bowstring plots | p. 444 |
Interpretation and hybridization | p. 451 |
Appendices | p. 453 |
References | p. 575 |
Author Index | p. 579 |
Subject Index | p. 581 |
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