| Preface | p. v |
| Contributors | p. xi |
| General Techniques | |
| Proteomics and the Molecular Biologist | p. 3 |
| Protein Identification from 2-D Gels Using In Vitro Transcription Translation Products | p. 17 |
| Selective Chemical Cleavage Methods in Proteomics, Including C-Terminal Successive Degradation | p. 29 |
| Means of Hydrolyzing Proteins Isolated upon ProteinChip Array Surfaces: Chemical and Enzymatic Approaches | p. 59 |
| A Combined Radiolabeling and Silver Staining Technique for Improved Visualization and Localization of Proteins on Two-Dimensional Gels | p. 73 |
| Qualitative and Quantitative Proteomic Analyses via Multidimensional Protein Identification Technology | p. 79 |
| Di- and Tri-Chromatic Fluorescence Detection on Western Blots | p. 93 |
| Multiplexed Proteomics: Fluorescence Detection of Protein Differences by Two-Dimensional Gel Electrophoresis and Computer-Based Differential Display | p. 107 |
| A Strategy for Characterizing Antibody/Antigen Interactions Using ProteinChip Arrays | p. 117 |
| Stable Isotope Labeling with Amino Acids as an Aid to Protein Identification in Peptide Mass Fingerprinting | p. 129 |
| The Use of [superscript 18]O Labeling as a Tool for Proteomic Applications | p. 145 |
| Automated Nanoflow Liquid Chromatography/Tandem Mass Spectrometric Identification of Liver Mitochondrial Proteins | p. 181 |
| In Silico Proteomics: Predicting Interactions from Sequence | p. 193 |
| Post-Translational Modifications, Variants, and Isoforms | |
| Predicting Glycan Composition from Experimental Mass Using GlycoMod | p. 225 |
| Querying GlycoSuiteDB | p. 233 |
| New Tools for Quantitative Phosphoproteome Analysis | p. 241 |
| Computer-Aided Strategies for Characterizing Protein Isoforms | p. 259 |
| Protein Variant Separations Using Cation Exchange Chromatography on Grafted, Polymeric Stationary Phases | p. 269 |
| Specific Systems | |
| Noninvasive Imaging of Protein-Protein Interactions in Living Animals | p. 283 |
| Strategies in Clinical Proteomics | p. 299 |
| Proteomic Profiling of the Cancer Microenvironment | p. 309 |
| Identification of Determinants of Sensitivity to Antitumor Drugs | p. 319 |
| Application of Proteomics to the Discovery of Serological Tumor Markers | p. 331 |
| Infectomic Analysis of Microbial Infections Using Proteomics | p. 347 |
| Toward a Complete Proteome of Bacillus subtilis: Cytosolic, Cell Wall-Associated, and Extracellular Proteins | p. 357 |
| Renal and Urinary Proteomics | p. 375 |
| Proteomics in Endocrinology | p. 397 |
| Proteomics in Plant Biology | p. 409 |
| Data Analysis | |
| Bioinformatics in Proteomics | p. 419 |
| Quantitative Characterization of Proteomics Maps by Matrix Invariants | p. 429 |
| Complexity of Protein-Protein Interaction Networks, Complexes, and Pathways | p. 451 |
| Patchwork Peptide Sequencing: Protein Identification by Accurate Mass-to-Sequence Conversion of High-Resolution Q-TOF Tandem Mass Spectrometry Data | p. 463 |
| Estimation of Bias in Proteome Research | p. 473 |
| Scoring Functions for Mass Spectrometric Protein Identification | p. 477 |
| Index | p. 487 |
| Table of Contents provided by Rittenhouse. All Rights Reserved. |
