Haplotyping

Part I: Haplotyping with Long Range PCR 1. Haplotyping of Heterozygous SNPs in Genomic DNA using Long Range PCR Barbara Arbeithuber, Angelika Heissl, and Irene Tiemann-Boege 2. Quantification and Sequencing of Crossover Recombinant Molecules from Arabidopsis Pollen DNA Kyuha Choi, Nataliya E. Yelina, Heidi Serra, and Ian R. Henderson Part II: Selective Sequencing of Gene Families (including the MHC) 3. Pacbio for Haplotyping in Gene Families Wei Zhang and Joachim Messing 4. High Molecular Weight DNA Enrichment with Peptide Nucleic Acid Probes Nicholas M. Murphy, Colin W. Pouton, and Helen R. Irving 5. High-Throughput Sequencing of the Major Histocompatibility Complex following Targeted Sequence Capture Johannes Proll, Carina Fischer, Gabriele Michelitsch, Martin Danzer, and Norbert Niklas 6. Pedigree-defined Haplotypes and their Applications to Genetic Studies Chester A. Alper and Charles E. Larsen Part III: Haploid-cell Typing 7. Haplotyping a Non-Meiotic Diploid Fungal Pathogen using Induced Aneuploidies and SNP/CGH Microarray Analysis Judith Berman and Anja Forche 8. Whole-genome Haplotyping of Single Sperm of Daphnia Pulex (Crustacea, Anomopoda) Sen Xu and Kim Young Part IV: Haplotyping Single Chromosomes 9. Chromosome-range Whole-genome High-throughput Experimental Haplotyping by single-chromosome Microdissection Li Ma, Wenzhi Li, and Qing Song 10. Phased Genome Sequencing through Chromosome Sorting Xi Chen, Hong Yang, and Wing Hung Wong Part V: Genome Wide Haplotyping 11. Long Fragment Read (LFR) Technology: Cost-effective, High-quality Genome-wide Molecular Haplotyping Mark A. McElwain, Rebecca Yu Zhang, Radoje Drmanac, and Brock A. Peters 12. Contiguity-Preserving Transposition Sequencing (CPT-seq) for Genome-Wide Haplotyping, Assembly, and Single-Cell ATAC-seq Lena Christiansen, Sasan Amini, Fan Zhang, Mostafa Ronaghi, Kevin L. Gunderson, and Frank J. Steemers 13. Fosmid Pool-Based Next Generation Sequencing to Haplotype-Resolve Whole Genomes Eun-Kyung Suk, Sabrina Schulz, Birgit Mentrup, Thomas Huebsch, Jorge Duitama, and Margret R. Hoehe Part VI: High throughput Haplotyping of Rare Variants 14. Discovery of Rare-haplotype Variants by Typing Millions of Single-molecules with Bead Emulsion Haplotyping (BEH) Elisabeth Palzenberger, Ronja Reinhardt, Leila Muresan, Barbara Palaoro, and Irene Tiemann-Boege Part VII: Computational Algorithms for Haplotyping 15. Computational Haplotype Inference from Pooled Samples Quan Long