General Introduction: From the Origin of Life on Earth to Life in the Universe | p. 1 |
The Search for Traces of Primitive Life and Other Imprints | p. 3 |
Microfossils | p. 3 |
Oldest Sedimentary Rocks | p. 4 |
One-handedness of Life | p. 4 |
Reconstructing Life in a Test Tube | p. 5 |
Primitive Earth Atmosphere | p. 6 |
Organic Synthesis | p. 6 |
Delivery of Organics by Comets and Meteorites | p. 7 |
Simulation Experiments | p. 9 |
Recreating the Chemistry of Primitive Life | p. 10 |
Search for Extraterrestrial Life | p. 11 |
The Diversity of Bacterial Life as a Reference for Extraterrestrial Life | p. 11 |
The Search for Life in the Solar System | p. 12 |
The Search for Life Beyond the Solar System | p. 15 |
Panspermia, Interplanetary Transfer of Life | p. 17 |
Conclusion | p. 18 |
References | p. 20 |
From Prebiotic Chemistry to the Origin of Life on Earth | |
Introduction | p. 27 |
A Rational Approach to the Origin of Life: From Amphiphilic Molecules to Protocells. Some Plausible Solutions, and Some Real Problems | p. 29 |
From Amphiphilic Molecules to "Protocells" by Understandable Processes. Self-Organisation and Self-Complexification | p. 29 |
Water and Self-Organisation of Amphiphiles | p. 30 |
The Structure of Liquid Water | p. 30 |
The Structure of Amphiphile-water Mixtures | p. 30 |
Properties Ensuing from the Self-organisation of Amphiphiles | p. 33 |
Extraction and Orientation | p. 33 |
Increased Concentration and Condensation | p. 33 |
Vectorial Properties | p. 34 |
Coating the Vesicles | p. 35 |
Vesicles and Nucleic Acids; Vesicles as Protocells | p. 36 |
The Nature of the Primitive Amphiphiles | p. 37 |
The Modernity of N-Acyl Lipids | p. 37 |
The Archaeal Lipids and Their Synthesis | p. 38 |
The Terpenoids as Universal Metabolites | p. 41 |
Some Remaining Problems | p. 41 |
The Problem of the Synthesis of Ingredients | p. 41 |
The Problem of Local Concentration | p. 42 |
The Problem of the Prevalence of Phosphates | p. 42 |
The Problem of Phosphorylation by Phosphoric Anhydrides | p. 43 |
The Problem of the C[subscript 5] Unit | p. 44 |
The Problem of the Cytoskeleton | p. 44 |
References | p. 44 |
Prebiotic Chemistry: Laboratory Experiments and Planetary Observation | p. 49 |
Simulation Experiments and Photochemical Models | p. 50 |
An Historical View of Miller's Experiment and the Development of a New Field: Prebiotic Chemistry | p. 50 |
An Overview of Experimental and Theoretical Data | p. 51 |
New Scenario for Prebiotic Chemistry | p. 53 |
Elementary Prebiotic Chemistry in Aqueous Solution | p. 54 |
Prebiotic Chemistry of HCN: Strecker Reaction or Oligomerization (see Box 2.1) | p. 54 |
Prebiotic Chemistry of HCHO, Formose Reaction | p. 57 |
Prebiotic Chemistry of Tholins | p. 58 |
Application of These Laboratory Experimental Data to Space Studies | p. 58 |
Telluric Planets | p. 58 |
Giant Planets and Their Satellites | p. 60 |
Conclusions | p. 67 |
References | p. 68 |
Chirality and the Origin of Homochirality | p. 73 |
Chirality: Basic Concepts | p. 73 |
Reactivity of Chiral Molecules | p. 78 |
Pasteur and the Discovery of Molecular Chirality | p. 79 |
Crystals and Crystallization | p. 81 |
Homochirality and Life | p. 82 |
The Why and When of Homochirality | p. 84 |
Origin of Homochirality and Spontaneous Symmetry Breaking | p. 86 |
Origin of Homochirality and Parity Violation | p. 89 |
Origin of Homochirality and Photochemistry | p. 91 |
Amplification of Enantiomeric Excesses | p. 93 |
Introduction | p. 93 |
Kinetic Resolution | p. 93 |
Chiral Catalysis | p. 95 |
Asymmetric Autocatalysis: Theoretical Models | p. 95 |
Asymmetric Autocatalysis: Experimental Data | p. 97 |
On the Possibility to Amplifying Enantiomeric Excesses due to Parity Violation | p. 99 |
Exogenous Origin of Homochirality | p. 101 |
Hypothesis and Summary | p. 104 |
Homochirality Analyses in the Solar System and Beyond | p. 107 |
References | p. 108 |
Peptide Emergence, Evolution and Selection on the Primitive Earth. I. Convergent Formation of N-Carbamoyl Amino Acids Rather than Free [alpha]-Amino Acids? | p. 117 |
Introduction | p. 117 |
Organic Molecules on the Primitive Earth | p. 118 |
Exogenous Amino Acids and Related Compounds | p. 119 |
Exhaustive Survey of Exogenous Amino Acids | p. 119 |
Formation Mechanisms of Exogenous Amino Acids | p. 120 |
Other Meteoritic Compounds Closely Related to Amino Acids | p. 125 |
Non-Racemic Exogenous [alpha]-Amino Acids | p. 126 |
Exogenous Peptides | p. 127 |
Conclusion | p. 127 |
Endogenous Organic Matter | p. 128 |
Endogenous [alpha]-Amino Acids | p. 128 |
Formation Mechanisms of [alpha]-Amino Acids and N-Carbamoyl Amino Acids Via Strecker and Bucherer-Bergs reactions | p. 129 |
The Set of Reversible Reactions | p. 132 |
The Set of Irreversible Reactions | p. 133 |
Fate of Primary and Secondary Amines (R[superscript 3]NH[subscript 2], R[superscript 3]R[superscript 4]NH) | p. 135 |
Conclusion | p. 135 |
Prebiotic Formation of [alpha]-Amino Amides and Hydantoins Through Strecker and Bucherer-Bergs Reactions | p. 136 |
Formation of Exogenous [alpha]-Amino Amides and Hydantoins | p. 136 |
Endogenous Formation of [alpha]-Amino Amides and Hydantoins | p. 138 |
Convergent Evolution Towards N-Carbamoyl Amino Acids under Prebiotic Conditions | p. 140 |
Conclusions | p. 141 |
References | p. 142 |
Peptide Emergence, Evolution and Selection on the Primitive Earth. II. The Primary Pump Scenario | p. 147 |
From N-carbarmoyl Amino Acids (CAA) to Peptides | p. 147 |
Introduction | p. 147 |
The Primary Pump | p. 149 |
Environmental Requirements | p. 151 |
Primitive Earth | p. 151 |
Primitive Atmosphere | p. 152 |
About the pH of Primitive Oceans | p. 156 |
Investigation of the Primary Pump | p. 157 |
Step-By-Step Experimental Investigation | p. 158 |
Integrated Experimental Approach: Chemoselectivity | p. 161 |
Energy | p. 163 |
Conclusions and Perspectives | p. 165 |
References | p. 166 |
The RNA World: Hypotheses, Facts and Experimental Results | p. 171 |
The Modern RNA World | p. 171 |
Where in the Living Cell is RNA Found? | p. 171 |
An RNA World at the Origin of Life? | p. 177 |
Facts | p. 178 |
Hypotheses | p. 178 |
But What do We Know about Primitive Replication? | p. 179 |
A Pre-RNA World | p. 181 |
Evolutive Usurpation | p. 181 |
Alternative Genetic Systems | p. 181 |
Optimizing the Functional Capacities of Ribonucleic Acids | p. 183 |
Coenzymes and Modified Nucleosides | p. 183 |
The Case of Adenine | p. 185 |
Mimicking Darwinian Evolution | p. 186 |
Other Perspectives | p. 189 |
Conclusion | p. 190 |
References | p. 190 |
Looking for the Most 'Primitive' Life Forms: Pitfalls and Progresses | p. 195 |
Simpler Doesn't Necessarily Mean Older! | p. 196 |
Hyperthermophiles are not Primitives, but are Remnants from Thermophilic Organisms | p. 197 |
Hyperthermophiles and the Hypothesis of a Hot Origin of Life | p. 197 |
Hyperthermophiles are Complex Prokaryotes | p. 198 |
Origin of Hyperthermophily | p. 200 |
LUCA was Probably not a Hyperthermophile | p. 201 |
Temperature and the RNA World | p. 203 |
Comparative Genomics: a Novel Approach to Retrace Our Most Distant Past | p. 204 |
Simple or Complex LUCA? A RNA or a DNA Genome? | p. 204 |
A Key Step: the Apparition of DNA | p. 206 |
Viruses: Essential Players in Evolution | p. 208 |
The Origin of the Nucleus: a Further Puzzle | p. 209 |
Conclusions and Perspectives | p. 211 |
More Data are Needed | p. 211 |
To not Forget Darwin! | p. 211 |
References | p. 212 |
The Universal Tree of Life: From Simple to Complex or From Complex to Simple | p. 217 |
Principles of Tree-Reconstruction Methods | p. 217 |
The Universal Tree of Life According to Woese | p. 221 |
Reconstruction Artefacts | p. 224 |
Multiple Substitutions Generate Reconstruction Problems | p. 224 |
Mutational Saturation Versus Resolving Power | p. 225 |
Compositional Bias | p. 228 |
Long-branch Attraction | p. 228 |
Heterotachy | p. 230 |
Rare Genomic Events as an Alternative Approach? | p. 232 |
Lateral Gene Transfer and the Quest for a Phylogeny of the Organisms | p. 235 |
A New Evaluation of the Universal Tree of Life | p. 237 |
The Root of the Universal Tree of Life | p. 237 |
Prokaryotic Phylogeny | p. 240 |
Eukaryotic Phylogeny | p. 241 |
The Importance of an Evolution by Simplification and by Extinction | p. 243 |
Exobiology, a Procession of Extinctions? | p. 246 |
References | p. 247 |
Extremophiles | p. 257 |
Some Concepts About Extremophiles | p. 257 |
What is an Extremophile? | p. 258 |
Some Extremophile Features | p. 258 |
Why Extremophiles are Interesting? | p. 259 |
Microbial Diversity | p. 260 |
Extreme Environments and Their Inhabitants | p. 261 |
Extremophiles and Extremotolerants | p. 261 |
Phylogenetic Groups Best Adapted to Extreme Conditions | p. 269 |
Resistance Forms and Longevity | p. 270 |
Extremophiles and Exobiology | p. 271 |
Hyperthermophiles | p. 271 |
Psychrophiles | p. 273 |
Halophiles and Evaporites | p. 274 |
The Deep Biosphere | p. 275 |
Perspectives | p. 275 |
References | p. 276 |
Appendices | |
Earth Structure and Plate Tectonics: Basic Knowledge | p. 283 |
Earth Internal Structure | p. 283 |
Inner Core (from 6378 to 5155 km Depth) | p. 283 |
Outer Core (from 5155 to 2891 km Depth) | p. 284 |
Lower Mantle (from 2891 to 670 km Depth) | p. 284 |
Upper Mantle (from 670 km to 7 km Depth Under Oceans and 30 km Depth Under Continents) | p. 285 |
Crusts (from 7 km Depth Under Oceans and 30 km Depth Under Continents to Surface) | p. 285 |
Hydrosphere | p. 286 |
Atmosphere | p. 286 |
Lithosphere and Asthenosphere | p. 286 |
Plate Tectonics | p. 287 |
Plates on the Surface of the Earth | p. 287 |
Margin Definitions | p. 287 |
Divergent Margin | p. 288 |
Convergent Margin | p. 291 |
Hot Spots | p. 293 |
Wilson Cycle | p. 294 |
Energy for Plate Tectonics | p. 295 |
References | p. 295 |
Useful Astrobiological Data | p. 297 |
Physical and Chemical Data | p. 297 |
Astrophysical Data | p. 304 |
Geological Data | p. 309 |
Biochemical Data | p. 319 |
Glossary | p. 325 |
Authors | p. 375 |
Index | p. 381 |
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