Scientific Computing with Multicore and Accelerators

Dense Linear Algebra Implementing Matrix Multiplication on the Cell B.E, Wesley Alvaro, Jakub Kurzak, and Jack Dongarra Implementing Matrix Factorizations on the Cell BE, Jakub Kurzak and Jack Dongarra Dense Linear Algebra for Hybrid GPU-Based Systems, Stanimire Tomov and Jack Dongarra BLAS for GPUs, Rajib Nath, Stanimire Tomov, and Jack Dongarra Sparse Linear Algebra Sparse Matrix-Vector Multiplication on Multicore and Accelerators, Samuel Williams, Nathan Bell, Jee Whan Choi, Michael Garland, Leonid Oliker, and Richard Vuduc Multigrid Methods Hardware-Oriented Multigrid Finite Element Solvers on GPU-Accelerated Clusters, Stefan Turek, Dominik Goddeke, Sven H.M. Buijssen, and Hilmar Wobker Mixed-Precision GPU-Multigrid Solvers with Strong Smoothers, Dominik Goddeke and Robert Strzodka Fast Fourier Transforms Designing Fast Fourier Transform (FFT) for the IBM Cell BE, Virat Agarwal and David A. Bader Implementing FFTs on Multicore Architectures, Alex Chunghen Chow, Gordon C. Fossum, and Daniel A. Brokenshire Combinatorial Algorithms Combinatorial Algorithm Design on the Cell/BE Processor, David A. Bader, Virat Agarwal, Kamesh Madduri, and Fabrizio Petrini Stencil Algorithms Auto-Tuning Stencil Computations on Multicore and Accelerators, Kaushik Datta, Samuel Williams, Vasily Volkov, Jonathan Carter, Leonid Oliker, John Shalf, and Katherine Yelick Manycore Stencil Computations in Hyperthermia Applications, Matthias Christen, Olaf Schenk, Esra Neufeld, Maarten Paulides, and Helmar Burkhart Bioinformatics Enabling Bioinformatics Algorithms on the Cell/BE Processor, Vipin Sachdeva, Michael Kistler, and Tzy-Hwa Kathy Tzeng Pairwise Computations on the Cell Processor, Abhinav Sarje, Jaroslaw Zola, and Srinivas Aluru Molecular Modeling Drug Design on the Cell BE, Cecilia Gonzalez- lvarez, Harald Servat, Daniel Cabrera-Benitez, Xavier Aguilar, Carles Pons, Juan Fernandez-Recio, and Daniel Jimenez-Gonzalez GPU Algorithms for Molecular Modeling, John E. Stone, David J. Hardy, Barry Isralewitz, and Klaus Schulten Complementary Topics Dataflow Frameworks for Emerging Heterogeneous Architectures and Their Application to Biomedicine, Umit V. Catalyurek, Renato Ferreira, Timothy D.R. Hartley, George Teodoro, and Rafael Sachetto Accelerator Support in the Charm++ Parallel Programming Model, Laxmikant V. Kale, David M. Kunzman, and Lukasz Wesolowski Efficient Parallel Scan Algorithms for Manycore GPUs, Shubhabrata Sengupta, Mark Harris, Michael Garland, and John D. Owens High Performance Topology-Aware Communication in Multicore Processors, Hari Subramoni, Fabrizio Petrini, Virat Agarwal, and Davide Pasetto Index